PipeBio

PipeBio is an integrated cloud-based bioinformatics platform designed for biologics discovery, enabling wet lab scientists and bioinformaticians to analyze antibody and peptide sequences alongside functional assay data. The platform brings together a comprehensive suite of tools to help teams identify better antibodies and therapeutic peptides faster, while also allowing bioinformaticians to deploy custom code and run tailored workflows. PipeBio has been acquired by Benchling, further expanding its reach within the life sciences ecosystem.

PipeBio is built for organizations working across antibody discovery, antibody engineering, short peptide discovery, and sequence analysis from NGS, Sanger, PacBio, and single-cell technologies. It is suitable for both bench scientists who need an easy-to-use interface and computational teams who require flexibility and automation.

Core Application Areas

• Antibody sequence analysis and discovery
• Antibody engineering
• Short peptide discovery
• NGS, Sanger, PacBio, and single-cell sequence analysis

Workflow Capabilities

• Combine any tools available on the PipeBio platform into single-click, end-to-end analysis workflows
• Configure standard analysis pipelines with just a few clicks by selecting desired parameters
• Ensure consistency across standard analysis pipelines and establish SOPs for repeatable processes
• Generate hit-lists of antibody candidates along with standardized output reports

Security and Compliance

• ISO 27001 compliant secure cloud platform with robust cybersecurity and application security measures
• Business continuity protocols and processes to ensure operational resilience
• Regular penetration testing and real-time threat monitoring
• Data backups and restoration capabilities
• Support for two-factor authentication (2FA)
• Support for Single Sign-On (SSO) and SCIM for enterprise identity management

Integration and API

• Connect PipeBio to existing IT infrastructure including ELN and LIMS systems as well as laboratory instruments
• Leverage pre-built Docker containers within the managed platform to support internal workflows and proprietary algorithms
• Access a REST API with full documentation and examples available on GitHub for custom automation and integration
• Engage with the PipeBio professional services team for custom development or specific integration requirements

PipeBio is delivered as a secure cloud platform, making it accessible to distributed teams without the need for on-premise infrastructure. Its open API and support for Docker containers provide the flexibility needed to embed PipeBio into complex enterprise environments, while its compliance posture and security controls meet the standards expected in regulated life sciences settings.